PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008241194.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 225aa    MW: 26103.4 Da    PI: 9.1972
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008241194.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.34.1e-131058350
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyeys 50
                    ie++  r+  + kR+  +lKK +EL +LCd+ + vii++++ ++l  ++
  XP_008241194.1 10 IEDDKSRKACYRKRKICLLKKLNELTILCDVSAFVIIYGPEkDELVVWP 58
                    99*************************************7515677666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-8159IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.063148IPR002100Transcription factor, MADS-box
CDDcd002669.95E-21384No hitNo description
SuperFamilySSF554551.12E-19392IPR002100Transcription factor, MADS-box
PfamPF003193.9E-141053IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MNNKLKTAWI EDDKSRKACY RKRKICLLKK LNELTILCDV SAFVIIYGPE KDELVVWPSR  60
PVVQELLEKF LRMPLVDQCR KMLDQKAYLK ERAAKIQEQI RKAKKKNHEM KMKDILRKIQ  120
EGKPLSEFET SDLIDFILFL EEKMLEIQER VELLEQHVPQ GAGEKEKGKE IENNAVNIPR  180
NENITGGICS SNNMGENEKS GFRLMGVDIK VRHLIHEGNN GGTQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008241194.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241194.11e-164PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A2H4G6G71e-157A0A2H4G6G7_PRUPE; MADS-box protein 37
STRINGXP_008241194.11e-163(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110141938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.15e-26AGAMOUS-like 48