PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008241450.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 250aa    MW: 29472.7 Da    PI: 6.1037
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008241450.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.96.2e-152875148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEde+l  +vk+ G+++W++ a++ g++R++ +c+ rw++yl
   XP_008241450.2 28 KGPWIEEEDERLTSYVKLKGNRRWDALAKESGLRRSGRSCRMRWLNYL 75
                     79********************************************97 PP
2Myb_DNA-binding53.26.6e-1785126548
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      T eE+++++++++++G++ W++Iar+++ gRt++++k++w++yl
   XP_008241450.2  85 TVEEEKIILHLHERWGNK-WSKIARMLP-GRTDNEIKNYWRTYL 126
                      89****************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.4782375IPR017930Myb domain
SuperFamilySSF466894.3E-2626122IPR009057Homeodomain-like
SMARTSM007175.6E-112777IPR001005SANT/Myb domain
PfamPF002496.1E-132875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-192982IPR009057Homeodomain-like
CDDcd001671.13E-73075No hitNo description
PROSITE profilePS5129424.99376130IPR017930Myb domain
SMARTSM007173.2E-1580128IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2283129IPR009057Homeodomain-like
PfamPF002491.8E-1585126IPR001005SANT/Myb domain
CDDcd001671.99E-1185126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MNLCKPMVEF PQTSDVSTXY MEGEKLRKGP WIEEEDERLT SYVKLKGNRR WDALAKESGL  60
RRSGRSCRMR WLNYLRPNLK HEHITVEEEK IILHLHERWG NKWSKIARML PGRTDNEIKN  120
YWRTYLKKKE PIQNGNFQCT SDKGQHSLFF QEVDMSAEKQ YNFNQHHDSV SNLCGAKDTC  180
SDDLGLSEFA LTNSPYETRL SDWISELLSE QSGINYNQDC NTGESDLCHL TWTPDDSNRW  240
ECPSFLWDMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-262612925127MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008241450.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241450.20.0PREDICTED: LOW QUALITY PROTEIN: myb-related protein MYBAS1
SwissprotQ9SCP12e-60MYB27_ARATH; Transcription factor MYB27
TrEMBLA0A314Y4781e-156A0A314Y478_PRUYE; Transcription factor MYB27
STRINGXP_008241450.11e-172(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131692631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.18e-63myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]