PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008241456.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HSF
Protein Properties Length: 288aa    MW: 32203.7 Da    PI: 5.3596
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008241456.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.71.4e-36101012102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++ +++isw+e+g++fvv+++ +fa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF++++F++g+kell +
  XP_008241456.1  10 FLTKTYQLVDDPSWDDVISWNESGTTFVVWKTVDFARDMLPKYFKHNNFSSFVRQLNTYGFRKTVPDQ---------WEFANDNFRRGQKELLAE 95 
                     9***************************************************************9998.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+ks
  XP_008241456.1  96 IRRRKS 101
                     ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-37393IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-57699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.16E-34799IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.7E-201033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.4E-321099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-204860IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-206173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.3705.4E-4148184IPR014751DNA repair protein XRCC4, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006302Biological Processdouble-strand break repair
GO:0006310Biological ProcessDNA recombination
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MAQRSVPAPF LTKTYQLVDD PSWDDVISWN ESGTTFVVWK TVDFARDMLP KYFKHNNFSS  60
FVRQLNTYGF RKTVPDQWEF ANDNFRRGQK ELLAEIRRRK SVTAGPGKAT ASEKSGGPST  120
PSNSGEEMAS TSTSSPDSKN PGAVETAAMG QASDLSGENE KLKKENENLS SELAQTKKQC  180
DELVGFLMDY LKVGPDQINR IMRQGSYVST RDEDENEDDD ADDDDDDDGK QKEGLKLFGV  240
WVKGDEKKKS KRTERDEKFG VGVGGTYAKK MKRAEFGAPM LKRGKVCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-2659925129Heat shock factor protein 1
5d5v_B7e-2659925129Heat shock factor protein 1
5d5v_D7e-2659925129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008241456.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9215800.0EU921580.1 Prunus mume clone GB-PrM-169 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241456.10.0PREDICTED: heat shock factor protein HSF24
SwissprotP223351e-100HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLM5VRF10.0M5VRF1_PRUPE; Uncharacterized protein
STRINGXP_008241456.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71143247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.11e-85heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]