PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008241559.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Dof

Protein Properties

Length: 338aa MW: 35959.8 Da PI: 8.7933

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008241559.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.9	5.4e-39	61	118	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk++ XP_008241559.1 61 ENLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKSA 118 6789***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	6.6E-33	62	117	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	6.0E-25	63	116	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.516	63	117	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	65	101	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MIQELFGGAG LSNIAGGGER KLISIHGGTT SSPSLSPSQS PSSSTTTTTT ATATTTTTTG 60 ENLRCPRCDS SNTKFCYYNN YNLTQPRHFC KTCRRYWTKG GALRNVPIGG GCRKNKSATV 120 STTPIGKAAS GKLKMVASEI GRSGFSGGFE NDVQASPILW GSPQNSHLLA LLRASHQNQN 180 PNPNPNPICN SVNVKEEGAM NMIGSHMMTT EPAMSTARTL GLDPVCQAPS LGLCSSFWRN 240 NNQNQQPPHH NQQNGFPVGH EVQSNIGIQE LFQRLRSSSS SSGGYYSDHL NNVVMSSSSS 300 TSSILDSTPA VGGGEMGYWN PAFTTWSSDL PTTNGAYH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008241559.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008241559.1	0.0	PREDICTED: dof zinc finger protein DOF2.4-like
TrEMBL	A0A314Y4S1	0.0	A0A314Y4S1_PRUYE; Dof zinc finger protein DOF2.4-like
STRING	XP_008241559.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7219	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	9e-35	TARGET OF MONOPTEROS 6