PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008241560.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 184aa    MW: 20643.1 Da    PI: 9.9539
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008241560.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00144365123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C++ F++   L  H  +H
  XP_008241560.1 43 FECKTCNRKFPSFQALGGHRASH 65
                    89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.5E-124267IPR007087Zinc finger, C2H2
SuperFamilySSF576677.12E-842118No hitNo description
PROSITE profilePS5015710.184370IPR007087Zinc finger, C2H2
SMARTSM003550.154365IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
PfamPF139121.6E-1195120IPR007087Zinc finger, C2H2
PROSITE profilePS501579.3996123IPR007087Zinc finger, C2H2
SMARTSM003550.3496118IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MKRMREDEVG LGMKGLDMEK FLMLLSCGME TKFRKCSSPN DVFECKTCNR KFPSFQALGG  60
HRASHKRPRT SMDHDQQSET RKGSNLMATK NKPKAHECSI CGLEFGMGQA LGGHMRRHRA  120
SNMNLGFSSK VPDEVVVASK IPVLKRSSSK RIMCLEMDLN LTPLENDLKL LFGEMAPKVD  180
AFVS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008241560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241560.11e-134PREDICTED: zinc finger protein ZAT11
TrEMBLM5WM451e-128M5WM45_PRUPE; Uncharacterized protein
STRINGXP_008241560.11e-133(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.17e-42C2H2 family protein