PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008241579.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 229aa    MW: 26026.6 Da    PI: 7.0861
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008241579.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.24.4e-1113753599
                    EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
              B3 35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99
                    ++ le ++g +W vkl  r + g+++l+kGW eF+k   Lk g  + F++ g+ s f  +v++f +
  XP_008241579.1 13 KIFLEVPDGAVWPVKL-TRPCNGEIWLQKGWPEFAKFYSLKHGCLLFFRYGGEhSHF--RVRIFMR 75
                    6899************.5888888**************************9976777..9998865 PP
2B335.91.3e-111652233186
                     .--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
              B3  31 eesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                     ++++ l   + + rsW vk+i    +++s++ +   GW  Fvk+n+L+egD +v++l+ 
  XP_008241579.1 165 ARGVSLLQISNDERSWAVKCITtvyKGRSRTRFHNFGWGPFVKDNHLEEGDACVLELIT 223
                     4555555566788*******7766566666677889********************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.617176IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-12575IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-12782IPR015300DNA-binding pseudobarrel domain
PfamPF023625.4E-91375IPR003340B3 DNA binding domain
CDDcd100177.40E-141373No hitNo description
SuperFamilySSF1019368.63E-10163223IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-9164224IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.474168229IPR003340B3 DNA binding domain
PfamPF023624.5E-9174223IPR003340B3 DNA binding domain
CDDcd100175.95E-9176222No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MLVMEYGDLM ADKIFLEVPD GAVWPVKLTR PCNGEIWLQK GWPEFAKFYS LKHGCLLFFR  60
YGGEHSHFRV RIFMRNTLEM KYFSSSTDDE AEGNSNPSSE TEGQGNKHDR DLALRTFAKT  120
ELEDLAYSKA LSFKSNNPFL CDENASIILI NSPVSVPFAN KQICARGVSL LQISNDERSW  180
AVKCITTVYK GRSRTRFHNF GWGPFVKDNH LEEGDACVLE LITKGPAIR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008241579.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241579.11e-173PREDICTED: B3 domain-containing protein Os03g0212300-like isoform X1
TrEMBLA0A314XK661e-122A0A314XK66_PRUYE; B3 domain-containing transcription factor VRN1 isoform X2
STRINGXP_008241579.11e-172(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2306834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-14B3 family protein