PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008241607.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TALE
Protein Properties Length: 862aa    MW: 92729.1 Da    PI: 7.2532
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008241607.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.33.1e-096026391954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  XP_008241607.1 602 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 639
                     664459******************************88 PP
2BELL121.43.8e-39462533172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     +r e+q++k+kLls+l+eVd+rY++y+eq+q+v+++F+ v+g g+a pYt+lA+ka+SrhFrcLkdai+ q+
  XP_008241607.1 462 DRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNAFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAITAQL 533
                     589******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.1E-85387531IPR006563POX domain
PfamPF075269.5E-52392530IPR006563POX domain
PROSITE profilePS5007112.568580643IPR001356Homeobox domain
SMARTSM003891.2E-9583647IPR001356Homeobox domain
CDDcd000863.73E-13583644No hitNo description
SuperFamilySSF466893.72E-17585650IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-28586649IPR009057Homeodomain-like
PfamPF059204.5E-18600639IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 862 aa     Download sequence    Send to blast
MGIATVPPLL PTPPSIFSSS SSKGHHHHSI IDSESYSNSP NSMSQDYHHQ GIFTFSNGFE  60
RSAMTTHQEQ QQQQQHHLAQ QIRREKLRVQ GFETPPPPPL VGLDEEESGG LPVYETAGML  120
SEMFNYPPGG GPAGASELLE HPMAQAYRMA RQQQEPVSGA AEWYGSRVVG GGLGALGDSK  180
NHNSRDSIQH HHQQQHQIST INADSAAAMQ LFLMNPSQPR SPSPPAHTTS STLHMLLPNP  240
SSTTNSLQGF ATPSGGGGAF GQFTWVPESH HGHDGGNPTG GAGEIGGVVE GQGLSLSLST  300
SLQHLEAAKA EEFRMGSDSA GGLLYYNSQG DHQGSTNQYK NLGAHHHHHQ HHQSQQQQQQ  360
ALHSLQQGGV VGGHVGFGSS SGSASSFGVV NVLRNSKYVK AAQELLEEFC SVGRGQLKKN  420
KFGGTGGRHN STNPSSNPAG SGGGGGASSS SSKDVPPLSA ADRIEHQRRK VKLLSMLDEV  480
DRRYNHYCEQ MQMVVNAFDL VMGFGAAVPY TALAQKAMSR HFRCLKDAIT AQLKHSCELL  540
GEKDGAGTSG ITKGETPRLK MLEQSLRQQR AFHQMGMMEQ EAWRPQRGLP ERSVNILRAW  600
LFEHFLHPYP SDADKHLLAR QTGLSRNQVS NWFINARVRL WKPMVEEMYQ QETNEEVGGA  660
AAAAADHHHQ DQRERNNQNQ NSSGLNAQTP TPTTTAATTT TTTTSTTTPT TTNSPTGKRS  720
EINASENDPS LITINRQQQQ LQHHLQQPMM ATTTASAVAL PASQCFATTS TTANDRLASE  780
DTRRRGSMVA ADYGTTSGNA HIAAHDHQSS SNIGSSTTLI SFGTTTAAGD VSLTLGLRHA  840
GGGNNMPEKN PSSFSIRDFG GC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-16589646158Homeobox protein Meis1
4xrs_B1e-16589646158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008241607.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0537690.0AF053769.1 Malus x domestica homeodomain protein (Mdh1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241607.10.0PREDICTED: BEL1-like homeodomain protein 4
TrEMBLM5W8A60.0M5W8A6_PRUPE; Uncharacterized protein
STRINGXP_008241607.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35243257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-144BEL1-like homeodomain 2