PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008241676.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 95aa    MW: 10953.6 Da    PI: 10.1861
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008241676.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53.1e-081155244
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     ++WT+   +l+ +a + +  +   +W++Iar +g g t++++k  +
   XP_008241676.1 11 LNWTAKQNKLFENALATYDEEtpdRWHKIARIVG-GTTEEEVKRQY 55
                     69*****************99*************.********877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.1E-6961IPR001005SANT/Myb domain
PfamPF002492.1E-51255IPR001005SANT/Myb domain
CDDcd001675.33E-61259No hitNo description
PROSITE profilePS500906.1331259IPR017877Myb-like domain
SuperFamilySSF466894.13E-111267IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MSKLSSPQPS LNWTAKQNKL FENALATYDE ETPDRWHKIA RIVGGTTEEE VKRQYEILLS  60
DIKRIESGKV PLPKYRKVGA SNISNEEKRL KILKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-3013951192RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008241676.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241676.17e-64PREDICTED: protein RADIALIS-like 3
SwissprotF4JVB84e-32RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A314YXC13e-60A0A314YXC1_PRUYE; Protein RADIALIS-like 3
STRINGXP_008241676.13e-63(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-34RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]