PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008241773.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 238aa    MW: 27594.2 Da    PI: 9.4767
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008241773.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.67.8e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k ien++nrqvt+skRrngi+KKA+EL vLCda+v++i++s+tgk++ey+s
  XP_008241773.1  9 KLIENHTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMLSNTGKMHEYIS 59
                    569**********************************************86 PP
2K-box82.68.7e-2871163193
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                     yqk+ g++l++++++ ++  l kLk+ +++L+re+R++lG dL+ L++++L++Le+++ +sl+ iR++K+++l++q+e+ +kk k+lqe+  +
  XP_008241773.1  71 YQKTLGVDLWSSHYQAMKDTLWKLKEINNKLRREIRQRLGHDLNGLTYEQLHSLEDKMASSLEAIRERKYHVLKTQMETYKKKVKNLQERRGN 163
                     7899999*********************************************************************************98755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.441161IPR002100Transcription factor, MADS-box
CDDcd002653.93E-37280No hitNo description
SuperFamilySSF554551.23E-35295IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-26323IPR002100Transcription factor, MADS-box
PfamPF003194.7E-231157IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-263859IPR002100Transcription factor, MADS-box
PfamPF014867.2E-2082164IPR002487Transcription factor, K-box
PROSITE profilePS5129714.47184175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGRGKIEIKL IENHTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMLSN TGKMHEYISP  60
TTTTKRMYDD YQKTLGVDLW SSHYQAMKDT LWKLKEINNK LRREIRQRLG HDLNGLTYEQ  120
LHSLEDKMAS SLEAIRERKY HVLKTQMETY KKKVKNLQER RGNMLHGYFD QEVASEDPQY  180
GYVDNEGDYE SAVALANGAS NLFTIHLHQD IRDHANLHHH GGSSLGSSIT HLHDLRLA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008241773.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7639090.0AB763909.1 Prunus avium APETALA3 mRNA for B class MADS-box, complete cds.
GenBankKM2433740.0KM243374.1 Prunus pseudocerasus APETALA3-like protein transcript variant 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241773.11e-177PREDICTED: floral homeotic protein DEFICIENS-like isoform X1
SwissprotQ003J21e-112TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLM5VQV71e-170M5VQV7_PRUPE; Uncharacterized protein
STRINGXP_008241773.11e-177(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.12e-72MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]