PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008241866.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 222aa    MW: 25638.3 Da    PI: 7.4329
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008241866.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.72.1e-1319109399
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     k+    d+ k+ r+ +p kf+ ++g+    s  + l+ ++g +We++l  r++ ++ +++ kGW eF k   L+    +vF ++g+s+f  +v +
  XP_008241866.1  19 KII-LDDTAKNIRIKIPMKFVMKYGEH--LSSPVHLKLPNGAEWEIEL--RRCNNGgVWFDKGWPEFSKFCSLDYANWLVFGYEGNSNF--HVLI 106
                     444.46888999************855..66679999***********..55555559***************************9999..**** PP

                     E-S CS
              B3  97 frk 99 
                     f++
  XP_008241866.1 107 FDR 109
                     *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.3E-2010110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-2111109IPR015300DNA-binding pseudobarrel domain
CDDcd100172.83E-1515108No hitNo description
PROSITE profilePS5086312.39316110IPR003340B3 DNA binding domain
SMARTSM010192.7E-917110IPR003340B3 DNA binding domain
PfamPF023623.3E-1019109IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MASLHDAPTS SAPIPHFFKI ILDDTAKNIR IKIPMKFVMK YGEHLSSPVH LKLPNGAEWE  60
IELRRCNNGG VWFDKGWPEF SKFCSLDYAN WLVFGYEGNS NFHVLIFDRT STEVEYAITK  120
PEMEETDYEE EDDNSVEILD GFPPCPRKAR DKSPLPCPQP HKKMRTSGKA ECNINFRPTK  180
TQTSLRNKAS DCSRSEMKSK EYNIYTFFLL VFCLVIILNR GR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008241866.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241866.11e-167PREDICTED: B3 domain-containing protein At4g01580-like
TrEMBLM5VS901e-130M5VS90_PRUPE; Uncharacterized protein
STRINGXP_008241866.11e-167(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-22B3 family protein