PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008241887.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ZF-HD
Protein Properties Length: 261aa    MW: 29250.2 Da    PI: 9.0368
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008241887.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1032e-32116172259
     ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                     +kvrY+eClkNhAas Ggh++DGCgEfmps gee  ++alkCaAC+CHRnFHR+e e 
  XP_008241887.1 116 QKVRYRECLKNHAASSGGHVLDGCGEFMPS-GEEDIPEALKCAACECHRNFHRKEIEG 172
                     689**************************9.88889******************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.0E-30118170IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-20119177IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.3E-30119170IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.417120169IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.22E-11206258IPR009057Homeodomain-like
TIGRFAMsTIGR015653.1E-22208254IPR006455Homeodomain, ZF-HD class
Gene3DG3DSA:1.10.10.604.6E-21208259IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEVRGQDKVI GMPTTLGYNP PNRDSSSSKL SSSPALPSTA NNTIFINPLQ TLDPHPPPHH  60
HQPHQLNLSP HKSSRRDSEQ NPDPISSPIV VTPSATSIPG GSNFKAPPVQ PPPAPQKVRY  120
RECLKNHAAS SGGHVLDGCG EFMPSGEEDI PEALKCAACE CHRNFHRKEI EGDHLPNNYY  180
VVNHQKHTIS RRDSETRVLQ LPPPPPPQKE KMMEVAEKLG WKIQRHDEQE VQKLCSEVGI  240
KRQVFKVWMH NNKQAMKKKQ M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A8e-172082552875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008241887.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241887.10.0PREDICTED: zinc-finger homeodomain protein 5-like
SwissprotQ9ZPW75e-48ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLA0A251NBY41e-115A0A251NBY4_PRUPE; Uncharacterized protein
STRINGXP_008241887.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50890.12e-39homeobox protein 28