PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008242120.2

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 794aa MW: 91161.5 Da PI: 7.0554

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008242120.2	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	98.5	7.3e-31	84	178	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GFs+r+s s++s+r+g i++r fvC +eg+r +++ k + + +r+r+etr+gCka+l+vk +++gkw+v+ +++eHnHel+p XP_008242120.2 84 FYNSYARRTGFSTRVSMSRRSRRDGAIIQRSFVCAREGFRVDKHGKpgsdrEGRVKRPRPETRVGCKAMLVVKIQDSGKWVVSAFVKEHNHELVP 178 9***************************************999999988888899**********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.6E-29	84	178	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-29	299	391	IPR018289	MULE transposase domain
Pfam	PF04434	5.7E-10	567	613	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.633	579	615	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.3E-6	590	617	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 794 aa Download sequence Send to blast
MEFEPLSLGN DVIEFDMMGL GDIDHSVDHD DLLHDSPPTA IPTPSVSDVV GSAAIFEPYI 60 PEGDTNLEPY EGMEFESEEA SKAFYNSYAR RTGFSTRVSM SRRSRRDGAI IQRSFVCARE 120 GFRVDKHGKP GSDREGRVKR PRPETRVGCK AMLVVKIQDS GKWVVSAFVK EHNHELVPPE 180 RVHCLRSHRH VSGAAKSLID TLQGAGIGPR GIMSALVKEY GGIKNIGFTE RDCRNYMRSS 240 RQRTLGGDTQ LLLDYLKDKQ AKDPAFFFAV QGDEDQCMSN VFWADPKART DYTYFGDTVT 300 FDTTYRSNRY RLPFAPFTGV NHHGQPVLFG CALLINESDA SFLWLFKTWL IAMSGRPPLS 360 ITTEHDRVIS LAITQVFPDT RHRFCKWHIF KECQEKLSYV HCEHSNFEAE LHKFVNLTES 420 VEEFESCWLS LIDKYDLREH QWLQLIYADR RQWVPVYLRD TFFAEISITQ RSDSMNSYFD 480 GYVNASTTLL LFVKQYEKAL ESRYEKEVKA DYDTINTAPI LKTPSPMEKQ AAGLYTRKMF 540 MKFQEELVET LTFLAMKVED EEAGSIYQVS KFGESHKAYF VRFNVHEMKA FCSCQRFEFS 600 GLLCAHILTV FRVTNVLTLP PHYILKRWTR NAKSGVILEE RASDLLNKSQ ESLTVRYNNL 660 RHEALKYVDE GVKSVEIYNV SMDALEEAAN RVSLAKKNDG RLAIVSRAGR DDRFHLGSRS 720 NTFGDHKWGF ETLSADEQDK KIQKLERQLD RAQRKCELYR ASLLSVLKDI EEQKLQLSVK 780 VENIKLGMKE SSIV

Sequence ? help Back to Top

Protein Sequence Length: 794 aa Download sequence Send to blast

MEFEPLSLGN DVIEFDMMGL GDIDHSVDHD DLLHDSPPTA IPTPSVSDVV GSAAIFEPYI  60
PEGDTNLEPY EGMEFESEEA SKAFYNSYAR RTGFSTRVSM SRRSRRDGAI IQRSFVCARE  120
GFRVDKHGKP GSDREGRVKR PRPETRVGCK AMLVVKIQDS GKWVVSAFVK EHNHELVPPE  180
RVHCLRSHRH VSGAAKSLID TLQGAGIGPR GIMSALVKEY GGIKNIGFTE RDCRNYMRSS  240
RQRTLGGDTQ LLLDYLKDKQ AKDPAFFFAV QGDEDQCMSN VFWADPKART DYTYFGDTVT  300
FDTTYRSNRY RLPFAPFTGV NHHGQPVLFG CALLINESDA SFLWLFKTWL IAMSGRPPLS  360
ITTEHDRVIS LAITQVFPDT RHRFCKWHIF KECQEKLSYV HCEHSNFEAE LHKFVNLTES  420
VEEFESCWLS LIDKYDLREH QWLQLIYADR RQWVPVYLRD TFFAEISITQ RSDSMNSYFD  480
GYVNASTTLL LFVKQYEKAL ESRYEKEVKA DYDTINTAPI LKTPSPMEKQ AAGLYTRKMF  540
MKFQEELVET LTFLAMKVED EEAGSIYQVS KFGESHKAYF VRFNVHEMKA FCSCQRFEFS  600
GLLCAHILTV FRVTNVLTLP PHYILKRWTR NAKSGVILEE RASDLLNKSQ ESLTVRYNNL  660
RHEALKYVDE GVKSVEIYNV SMDALEEAAN RVSLAKKNDG RLAIVSRAGR DDRFHLGSRS  720
NTFGDHKWGF ETLSADEQDK KIQKLERQLD RAQRKCELYR ASLLSVLKDI EEQKLQLSVK  780
VENIKLGMKE SSIV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	138	142	KRPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008242120.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008242120.2	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	M5W6V8	0.0	M5W6V8_PRUPE; Uncharacterized protein
STRING	EMJ04988	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]