PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008242151.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 470aa MW: 50929.7 Da PI: 4.6688

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008242151.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.7	3.3e-11	284	329	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L+el+P++ + +Ka++L + +eY+k Lq XP_008242151.1 284 HSIAERLRREKIAERMKNLQELVPNS-----NRTDKASMLDEIIEYVKFLQ 329 99*********************7.....59***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.14E-16	277	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.76E-12	277	333	No hit	No description
PROSITE profile	PS50888	16.901	279	328	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-15	281	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-8	284	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.2E-12	285	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MDNYLNQFFS SSSWSDVDVK KISSWGCCEC GQPNEMLLNS AGVDEDDNNS SPTYLTNSNH 60 SMESLAAQDA SSIVHDLESD AQDDGKHFKP NLSNGKVDRS FKVENPGLQY DVDIVTPCSL 120 ASLEQLPLNG NMVRTSLSGI EPENVVCNNR EPSMFERFNG DFETLSSISQ LWPLQSYEGV 180 PSSLSPGMGQ HRMCSFGLKG EYGDNGTYAM ANDPNNLAAL VSTEGKQDLQ NYPLPSFASG 240 PQITMTMSGL QSLQQATSTT PSAECTGTGK PRMRARRGQA TDPHSIAERL RREKIAERMK 300 NLQELVPNSN RTDKASMLDE IIEYVKFLQL QIKVLSMSRV GAAGAVVPLI TDTQQANGAN 360 GSSLLPSVGQ VTDISFNEIA LEQVARLMES DVTKAMQHLQ SKGLCLMPIA LADAISTEKK 420 SSSSPAPASD DWKKTGFNDS GLVQNNSSSS SNSSLPEVKQ EAKNHSFAAR

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MDNYLNQFFS SSSWSDVDVK KISSWGCCEC GQPNEMLLNS AGVDEDDNNS SPTYLTNSNH  60
SMESLAAQDA SSIVHDLESD AQDDGKHFKP NLSNGKVDRS FKVENPGLQY DVDIVTPCSL  120
ASLEQLPLNG NMVRTSLSGI EPENVVCNNR EPSMFERFNG DFETLSSISQ LWPLQSYEGV  180
PSSLSPGMGQ HRMCSFGLKG EYGDNGTYAM ANDPNNLAAL VSTEGKQDLQ NYPLPSFASG  240
PQITMTMSGL QSLQQATSTT PSAECTGTGK PRMRARRGQA TDPHSIAERL RREKIAERMK  300
NLQELVPNSN RTDKASMLDE IIEYVKFLQL QIKVLSMSRV GAAGAVVPLI TDTQQANGAN  360
GSSLLPSVGQ VTDISFNEIA LEQVARLMES DVTKAMQHLQ SKGLCLMPIA LADAISTEKK  420
SSSSPAPASD DWKKTGFNDS GLVQNNSSSS SNSSLPEVKQ EAKNHSFAAR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008242151.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008242151.1	0.0	PREDICTED: transcription factor bHLH112-like
TrEMBL	A0A251NDR0	0.0	A0A251NDR0_PRUPE; Uncharacterized protein
STRING	XP_008242151.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15061	13	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	3e-58	LJRHL1-like 3