PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008242211.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 323aa    MW: 36004.3 Da    PI: 7.3681
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008242211.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed+ l +++k++G g+W+  +++ g++R++k+c++rw++yl
   XP_008242211.1 14 KGAWTAHEDKVLSEYIKLHGEGRWRNLPKKAGLKRCGKSCRLRWLNYL 61
                     79********************************************97 PP
2Myb_DNA-binding53.17.2e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ +++E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ 
   XP_008242211.1  67 RGNISPDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111
                      7899******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.381961IPR017930Myb domain
SuperFamilySSF466894.21E-2812108IPR009057Homeodomain-like
SMARTSM007178.2E-131363IPR001005SANT/Myb domain
PfamPF002491.6E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-221568IPR009057Homeodomain-like
CDDcd001674.41E-101661No hitNo description
PROSITE profilePS5129425.67462116IPR017930Myb domain
SMARTSM007175.3E-1666114IPR001005SANT/Myb domain
PfamPF002494.4E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2469116IPR009057Homeodomain-like
CDDcd001672.36E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGRSACCAKE GLNKGAWTAH EDKVLSEYIK LHGEGRWRNL PKKAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SPDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLGKKIQDQQ  120
RQGSASNLKH HNKNGERVSK KAKTTEDMSP NMTSPSPSKM SPVVRTKAAK CTKVFINPDP  180
HKLPLGHQHC EENNRGGLML DRHAGDDHTN NGSSSLSSFS NIADQENSSS DFLVDFDMNE  240
ISLASLLNSD FPAINCDDVD QNGANSLSHC VDQPAQIFSE EMLQHLNGGS HDCVQVQPNL  300
VLNFHSLTSF LDGDQGGEEW LGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008242211.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008242211.10.0PREDICTED: anthocyanin regulatory C1 protein-like
TrEMBLM5WG390.0M5WG39_PRUPE; Uncharacterized protein
STRINGXP_008242211.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.18e-62MYB family protein