PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008242310.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 270aa    MW: 30999.8 Da    PI: 8.762
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008242310.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.21.1e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     r +WT++Ede+l ++++ +G+g W+  +++ g++R++k+c+ rw +yl
   XP_008242310.2 14 RRAWTAQEDEILSNYINTYGKGKWSDLPQRAGLKRSGKSCRMRWVNYL 61
                     679*******************************************97 PP
2Myb_DNA-binding50.35.6e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ +++E+ l+v+++k+lG++ W++Ia +++ gRt++++k++w+++l
   XP_008242310.2  67 RGNISADEEVLIVRLHKLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 112
                      7899******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-21564IPR009057Homeodomain-like
PROSITE profilePS5129413.913961IPR017930Myb domain
SuperFamilySSF466893.67E-2811108IPR009057Homeodomain-like
SMARTSM007174.1E-121363IPR001005SANT/Myb domain
PfamPF002495.9E-131461IPR001005SANT/Myb domain
CDDcd001671.28E-81661No hitNo description
PROSITE profilePS5129423.75362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.3E-2365115IPR009057Homeodomain-like
SMARTSM007175.8E-1566114IPR001005SANT/Myb domain
PfamPF002494.6E-1467112IPR001005SANT/Myb domain
CDDcd001673.27E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MRRRPCYEKE GINRRAWTAQ EDEILSNYIN TYGKGKWSDL PQRAGLKRSG KSCRMRWVNY  60
LRPGIKRGNI SADEEVLIVR LHKLLGNRWS LIAGRIPGRT DNEIKNYWNT HLSKRSSSDQ  120
ELLEHHKPSI NPKNQHNEKG LIPSDQSHKA KAIRPKHFKC TKVDAGIPSH LQDDQDHQIM  180
VDTTNNINSV SSSVPAGSSS NDLFILDSLN STEIQQAQMK EWQVAMVENY WRGSPIIADV  240
DPFEPNIDGE VAFNALSSFM NIEDYQYWIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-231211525127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008242310.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008242310.20.0PREDICTED: transcription repressor MYB5-like
SwissprotQ388504e-55MYB5_ARATH; Transcription repressor MYB5
TrEMBLM5W5G71e-168M5W5G7_PRUPE; Uncharacterized protein
STRINGEMJ044981e-169(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3991522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-57myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]