PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008242340.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GATA
Protein Properties Length: 335aa    MW: 36432.9 Da    PI: 9.4967
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008242340.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.4e-19188221134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  XP_008242340.1 188 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 221
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.3E-21182233IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-13183222No hitNo description
Gene3DG3DSA:3.30.50.101.6E-15186221IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.466186218IPR000679Zinc finger, GATA-type
CDDcd002025.69E-14187219No hitNo description
PfamPF003204.7E-17188221IPR000679Zinc finger, GATA-type
PROSITE patternPS003440188213IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAPPSPFLEL SGDGGDHDHQ YHHLFNLEPQ TSFSSSSFSS PIFLTPSQAQ APSDHYREPQ  60
NFQFQLLEAD HHNIVSYGGS CDHDPQTLEN ESGSGTILKL SISKNGAGRN GNPSTDKWMS  120
SKMRMMKKMT NPDQTSSSCT SSDDKPVAMK LSISHKSEEQ KPQHPDMISC SNNSSNNMNN  180
NVPIIRVCSD CNTTKTPLWR SGPRGPKSLC NACGIRQRKA RRAMAAAAAA ASGTTLAAAP  240
PMKSTSKVQH KDNKPRLAST VPFKKRPYNK LSSTPPSKGR PPKKLCFEDF AISMNNNHSS  300
SATTTTTTSL QRVFPQDEKE AAILLMALSC GLVHG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008242340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008242340.10.0PREDICTED: GATA transcription factor 21
TrEMBLA0A251NEN00.0A0A251NEN0_PRUPE; Uncharacterized protein
STRINGXP_008242340.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.15e-26cytokinin-responsive gata factor 1