PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008242452.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 249aa    MW: 27610.8 Da    PI: 7.3359
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008242452.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.8e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd  l+++ + +G+g +W + + + g++R++k+c++rw++yl
   XP_008242452.1 14 RGPWSPEEDTTLKNYLHNHGTGgNWISLPTKAGLNRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding41.14.1e-1368111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +T+eEd l+  +    G++ W+ Ia+ ++ gRt++++k++w++
   XP_008242452.1  68 RGGFTEEEDNLICTLYGTIGSR-WSVIASQLP-GRTDNDVKNYWNT 111
                      788*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.208962IPR017930Myb domain
SuperFamilySSF466898.07E-2712109IPR009057Homeodomain-like
SMARTSM007171.2E-101364IPR001005SANT/Myb domain
PfamPF002492.4E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-241569IPR009057Homeodomain-like
CDDcd001675.79E-81662No hitNo description
PROSITE profilePS5129419.98163117IPR017930Myb domain
SMARTSM007171.1E-1267115IPR001005SANT/Myb domain
PfamPF002495.8E-1268111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2370116IPR009057Homeodomain-like
CDDcd001671.51E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRAPCCDKS KVKRGPWSPE EDTTLKNYLH NHGTGGNWIS LPTKAGLNRC GKSCRLRWLN  60
YLRPDIKRGG FTEEEDNLIC TLYGTIGSRW SVIASQLPGR TDNDVKNYWN TKLKKKFFAA  120
NNMNLASREF PASVPKFEFG TSQDHGTSSS CFDGTLPYLM DVSLGQSFDQ QKQISQFPHS  180
NFLEVNDFGT CGSKSFTNIS SSQEASSLPT SSILGLENNY TLWSGYESGA LTDYGFEPPA  240
DALLGNFGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008242452.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008242452.10.0PREDICTED: myb-related protein 330-like
TrEMBLM5VX131e-180M5VX13_PRUPE; Uncharacterized protein
STRINGXP_008242452.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.13e-71myb domain protein 68