PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008242464.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 213aa    MW: 23832.2 Da    PI: 4.7946
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008242464.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2188.1e-063456123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C++sFs+   L  H++ H
  XP_008242464.1 34 YTCTFCTRSFSNAQALGGHMNIH 56
                    9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.5E-63159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.47E-73161No hitNo description
SMARTSM003550.00383456IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.5933461IPR007087Zinc finger, C2H2
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051973Biological Processpositive regulation of telomerase activity
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MERNHSSNNI EKFDLIKWSS SDDQISGAGQ AKSYTCTFCT RSFSNAQALG GHMNIHRRDR  60
ARIRQFSEDQ NHLANISSTD GITKNPSARH SRANSEDKNS IHMELNETNI PRNPILSYPF  120
TRDEDDDVVI IDAANKGKVG IEEVQVQLQL PLFVEEPSGL ACTVDINKNT GECTSGGCRD  180
EETMKRGEEL DLELRLGPEP TETPSTLSTR EFF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008242464.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008242464.11e-159PREDICTED: transcriptional regulator TAC1
TrEMBLM5W1921e-135M5W192_PRUPE; Uncharacterized protein
STRINGXP_008242464.11e-158(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.11e-15C2H2 family protein