PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008242571.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 382aa    MW: 41302 Da    PI: 6.8426
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008242571.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.000512452831255
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  XP_008242571.1 245 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 283
                     6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.553233282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.77E-6243287No hitNo description
SuperFamilySSF474595.89E-10243293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-7247289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MNRGVNLQSS PVQQMMAGNP NWWNINSMRP PTQPSVTSPF LPPSPPPPSF FIPQFVPNTS  60
SSPSTTSSGL PFPSWHIDDN IQELPESWSQ LLLGGLVGED EKGALMRQFH QAKNKLENWG  120
EQILSSTQAP NAPAADVKQE SSGCGSFVYG HQQGVNDHQH HQDFQSAALS SLSQIMQSTA  180
SASSSPKSSC VTSFNTSMLD FSSKSDVRHP PPHRSSDQCN STANGGGALK RARVQPSSSP  240
TFKVRKEKLG DRITALHQLV SPFGKTDTAS VLLEAIGYIR FLQSQIEALS LPYLGNGSGN  300
MRQQPQSAVH GERNCMFPED PGQLLNDNCM KRKGAPEQDA DEEAKKDLRS RGLCLVPVSC  360
TLQVGSDNGA DYWAPALGGG FQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008242571.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008242571.10.0PREDICTED: transcription factor bHLH68
SwissprotQ8S3D11e-95BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A314Z2Z60.0A0A314Z2Z6_PRUYE; Transcription factor bHLH68
STRINGXP_008242571.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.13e-85bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]