PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008242577.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family G2-like
Protein Properties Length: 516aa    MW: 55995.6 Da    PI: 4.9934
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008242577.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like66.83.6e-21111163356
         G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     r  Wt  LH++F+ea++++ G ++AtP  il++mk +gLt   v SHLQkYR++
  XP_008242577.1 111 RTIWTISLHKKFLEAIAHI-GLDNATPTGILKFMKEPGLTARRVGSHLQKYRIH 163
                     889****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.15E-13110165IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.1E-20110165IPR009057Homeodomain-like
TIGRFAMsTIGR015574.9E-18111163IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MASKSGSIVA LRFSVLILCL QGTYAYRIGG DASASASASA EAASATASAS VLIVALMFSV  60
PIICFQSIYA YRIGRDASAS ASGPIEGGFG NGNRDSQGYG DDEERTAAPR RTIWTISLHK  120
KFLEAIAHIG LDNATPTGIL KFMKEPGLTA RRVGSHLQKY RIHLKAKEAA AGDEDKLDRL  180
SRSSFARERL SRSDGSTFQV QPSAGIGSTL PLTAAASNCH GFIQFSNDQQ SSTSNSSRSI  240
PRQQPTLGNR NWDQLFFQEP SNNFENGGMS FDPMNNVGLT NNNTGTNNLM QVYPLQSQPG  300
TNNPFSHNLA TSVNQNGWNF TPMSSSFDNL GSHFNDVNQF GVYWRSSCSA GFETGASSAN  360
QFPPNLPDNN GDLDQQQNVP VLPPPEGNFN DQCGLPNISV GGGNVENSNR HLHDNFMMPA  420
YLFTDGQDNY QPPPQQQDGG HDQGQLPYQF EVQDPAANQV PNPSADQVPN PGPYHVEDNH  480
ETILEPGVPT VFESEDLNIC LHTCQNIYGM LIRNWY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008242577.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008242577.10.0PREDICTED: putative two-component response regulator ARR21
TrEMBLA0A251NVT10.0A0A251NVT1_PRUPE; Uncharacterized protein
STRINGXP_008242577.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3991822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05090.11e-15G2-like family protein