PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008242674.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family CPP
Protein Properties Length: 592aa    MW: 62873.7 Da    PI: 7.8119
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008242674.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR41.91.9e-13119158242
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                     ++k+CnCk+s+Clk+YCeCfa+g +C+  C+C +C+N+ e+
  XP_008242674.1 119 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCVNCCNNVEN 158
                     89**************************.********9875 PP
2TCR512.8e-16203242140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  XP_008242674.1 203 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCIDCKNFE 242
                     589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.6E-15118158IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.214119243IPR005172CRC domain
PfamPF036384.2E-10120155IPR005172CRC domain
SMARTSM011143.5E-20203244IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.2E-13206241IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MGEADGDESA PTKGQSDAAP AATTSSSSSM SDVPAKKLAR QLDFTGFGGA PASVAVPELP  60
KPQLATVSVQ QSQPKPPVVS VPVPVPPQPP ISSVRPVKPE SPKSRPRPNV DAKDGTPKKQ  120
KQCNCKHSRC LKLYCECFAS GIYCDGCNCV NCCNNVENEG ARRDAVEATL ERNPNAFRPK  180
IASSPHGPRD TREEAGEVLI LGKHNKGCHC KKSGCLKKYC ECFQANILCS ENCKCIDCKN  240
FEGSEERQAL FHGDHGNNMA YLQQAANAAI TGAIGSSGYA SSPPISKKRK GQELFGPTAK  300
DPSIHRIGQF QQGNHIRPPA PSSLASVPVN RLGGAAGLGP SKFTYRSLLA DIIQPQDLKE  360
LCSVLVVVAE EAAKTLAEQR NTAEKPTETS LASTTQDRLQ SQKESDAQKA VADDCSSANE  420
ADKISPDDSS SDGADVPKGR PMSPATLALM CDEQDTMFMS AASPNGLMGN RCNTSSQLPN  480
GQGMTEVYAE QERIVLTKFR DCLNRLITFG EIKETKCSSL ARSEAETQKE QPSNGSTKAR  540
METGNQQGPV SNGVAKPAVP LTAKTTTPHM VAALAVGKTP SHPENGESRP KD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A9e-3212025211132Protein lin-54 homolog
5fd3_B9e-3212025211132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008242674.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008242674.10.0PREDICTED: protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A314XT530.0A0A314XT53_PRUYE; Protein tesmin/TSO1-like CXC 6
STRINGXP_008242674.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.10.0Tesmin/TSO1-like CXC domain-containing protein