PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008242897.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TALE
Protein Properties Length: 369aa    MW: 41934.7 Da    PI: 5.8576
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008242897.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.59.3e-083083402254
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +yp++e++++L +++gL+ +q+ +WF N+R +
  XP_008242897.1 308 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 340
                     69*****************************87 PP
2ELK292.3e-10261282122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+++Y+++++++++E++
  XP_008242897.1 261 ELKHELKQGYKEKIVDIREEIL 282
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.9E-1694138IPR005540KNOX1
PfamPF037901.4E-1596136IPR005540KNOX1
SMARTSM012561.0E-22149205IPR005541KNOX2
PfamPF037911.3E-16155204IPR005541KNOX2
SMARTSM011886.1E-4261282IPR005539ELK domain
PROSITE profilePS512139.969261281IPR005539ELK domain
PfamPF037898.3E-7261282IPR005539ELK domain
PROSITE profilePS5007111.758281344IPR001356Homeobox domain
SuperFamilySSF466893.21E-16283347IPR009057Homeodomain-like
SMARTSM003894.1E-11283348IPR001356Homeobox domain
CDDcd000861.36E-11284345No hitNo description
Gene3DG3DSA:1.10.10.601.8E-25288347IPR009057Homeodomain-like
PfamPF059209.8E-18301340IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MAFHHHHHHQ QQQTPPEMAF HSFASDPPPL SGAPTWLNNA AFRQQNNFLH DARNDDVVIS  60
PSGKSSNCSG RNRREISGYD GEEEEEDELE CESARFKADL VGHPLYEQLV SAHVSCLRIA  120
TPVDQLPRID EQLVQSQRVV DKYSALRANG DVPVMDEKEL DLFMTNYVLL LCSFKEQLQQ  180
HVRVHAMEAV MACWELDQSL QSLTGASTGE GTGATMSDDD DQVDSDINSY DGSLDGPDTM  240
GFGPLVPTES ERSLMERVRQ ELKHELKQGY KEKIVDIREE ILRKRRAGKL PGDTTSVLKS  300
WWQSHSKWPY PTEEDKARLV QETGLQLKQI NNWFINQRKR NWHSNISSTS VLKSKRKSNA  360
GDISSQRLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008242897.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1071100.0EF107110.1 Prunus persica KNOPE4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008242897.10.0PREDICTED: homeobox protein knotted-1-like 4 isoform X1
SwissprotP480001e-162KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A251NGW30.0A0A251NGW3_PRUPE; Uncharacterized protein
STRINGXP_008242897.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-146KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]