PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008243129.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 242aa    MW: 27376 Da    PI: 7.273
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008243129.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.24e-1571122155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++ +hn+ Er RR+++Ns ++ Lr+llP +   ++kKls   +  ++ +YI +Lq
  XP_008243129.1  71 KKLNHNASERDRRKKMNSLYSSLRSLLPAD---QGKKLSIPNTISHVLKYIPELQ 122
                     6789**************************...*******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.93570121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-1571138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-1371136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.61E-471126No hitNo description
PfamPF000103.3E-1271122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-976127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MLALSPPLFS TIAWPSEDLL SHDQNYFNRD SSIDQSAESF LHILPSHQPQ VDLDRSTTIS  60
RDYSGVSTMA KKLNHNASER DRRKKMNSLY SSLRSLLPAD QGKKLSIPNT ISHVLKYIPE  120
LQKQVEGLIQ NREELLSRAC KQEAAMHEEK QIKSTARSSL SAVSTYRLSD RAVAIQISTL  180
KTHNNLLSEI LLILEEEGLQ VLNASSFQSS GGRVFYNIHL QVERADRLEC ENLSEKLMSF  240
YA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008243129.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243129.11e-178PREDICTED: transcription factor ORG2-like
TrEMBLM5W4A41e-157M5W4A4_PRUPE; Uncharacterized protein
STRINGXP_008243129.11e-177(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.13e-53bHLH family protein