PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008243173.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family RAV
Protein Properties Length: 417aa    MW: 45441.8 Da    PI: 9.3833
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008243173.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.29.5e-1479127155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+ykGV   + +grW A+I++      ++r++lg+f  ++eAaka++ a+++++g
  XP_008243173.1  79 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAAKAYDVAAQRFRG 127
                     89****9888.8*********3.....5**********99*************98 PP
2B396.61.7e-30217330196
                     EEEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                     f+k+ tpsdv+k++rlv+pk++ae+h                  gg+  +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk+++Lk+g
  XP_008243173.1 217 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqsgnnfnnhtttstsGGSACKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAG 311
                     89****************************999998888888876676799******************************************** PP

                     -EEEEEE-SSSEE..EEEE CS
              B3  78 DfvvFkldgrsefelvvkv 96 
                     D+v F+++  ++++l++ +
  XP_008243173.1 312 DIVSFQRSTGQDKQLYIDW 330
                     ******8766777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.2E-1779136IPR016177DNA-binding domain
PfamPF008474.2E-979127IPR001471AP2/ERF domain
CDDcd000184.86E-2679137No hitNo description
Gene3DG3DSA:3.30.730.102.2E-2080135IPR001471AP2/ERF domain
SMARTSM003801.2E-2880141IPR001471AP2/ERF domain
PROSITE profilePS5103220.23180135IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.0E-40208334IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-29215333IPR015300DNA-binding pseudobarrel domain
CDDcd100177.62E-28216319No hitNo description
PfamPF023623.9E-28217330IPR003340B3 DNA binding domain
SMARTSM010193.2E-25217334IPR003340B3 DNA binding domain
PROSITE profilePS5086312.802217334IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048573Biological Processphotoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MDGISLSSTE ESTTSDSISI SPNNHLLPTT IAMSPIAKSS PHADSLCRLG SGASSVILDS  60
EISSGGVGIE AESRKLPSSK YKGVVPQPNG RWGAQIYEKH QRVWLGTFNE EDEAAKAYDV  120
AAQRFRGRDA VTNFKPSPTG TGTDDDESDD VEAAFLNTHS KSEIVDMLRK HTYNDELEQS  180
KRNNYGFLDA NGKRARAHGP LGPFGSDRVP KAREQLFEKA VTPSDVGKLN RLVIPKQHAE  240
KHFPLQSGNN FNNHTTTSTS GGSACKGVLL NFEDVGGKVW RFRYSYWNSS QSYVLTKGWS  300
RFVKEKNLKA GDIVSFQRST GQDKQLYIDW KPRMNVNNNN SSGVGSVPVQ PVQMVRLFGV  360
NIFKIPGSGG GAVVDAATAA IGGGSCNNNI NNVGKRMREM ELLELEFSKK PRIIGAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A9e-5821433311117DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00024PBMTransfer from AT1G25560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008243173.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243173.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1
SwissprotQ9C6M51e-143RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A314YM370.0A0A314YM37_PRUYE; AP2/ERF and B3 domain-containing transcription factor RAV1
STRINGXP_008243173.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-132RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]