PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008243228.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 218aa MW: 23234.4 Da PI: 8.5861

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008243228.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	86	5.2e-27	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C ++p + p++q++++ +++k++G++ +l+l++a ++ r+++++sl+yeA+ r+ +P G+vg+++++++ +q+ XP_008243228.1 4 SCNGCRVLRKGCSEKCSIRPSIewiksPDSQANATLFLAKFYGRAGLLNLINAGAQHLRPAIFKSLLYEACGRIVNPTFGSVGLMSSGSWAQCQA 98 6******************************************************************************************** PP DUF260 91 kaelallkee 100 +++++l++++ XP_008243228.1 99 AVDAVLAGSP 108 99988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.085	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.7E-21	4	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSEKCS IRPSIEWIKS PDSQANATLF LAKFYGRAGL LNLINAGAQH 60 LRPAIFKSLL YEACGRIVNP TFGSVGLMSS GSWAQCQAAV DAVLAGSPIS GLDADALNLI 120 PSPPNTSGDI RHVFRDSNSG ASRNKVATRN RFKRSMNKSK THPGSLTDFA TGSHMAQFCN 180 FPDPDDLCPS PEGNGAGGDY DGEVGLELTL GLVPMRLN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008243228.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008243228.1	1e-161	PREDICTED: LOB domain-containing protein 42-like
Swissprot	Q9M886	3e-68	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	M5XZ87	1e-155	M5XZ87_PRUPE; Uncharacterized protein
STRING	XP_008243228.1	1e-160	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	2e-69	LOB domain-containing protein 41