PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008243444.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 225aa    MW: 25354.9 Da    PI: 9.3234
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008243444.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.7e-1969123256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq + Lee F+++++++ +++e LA++l+L  rqV vWFqNrRa+ k
  XP_008243444.2  69 RKKLRLTKEQSRLLEESFRQHHTLNPKQKEALAMQLKLRPRQVEVWFQNRRARSK 123
                     78889************************************************98 PP
2HD-ZIP_I/II119.51.7e-3869157189
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                     +kk+rl+keq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr+
  XP_008243444.2  69 RKKLRLTKEQSRLLEESFRQHHTLNPKQKEALAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRA 157
                     69*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.2E-1956119IPR009057Homeodomain-like
SuperFamilySSF466892.95E-1958126IPR009057Homeodomain-like
PROSITE profilePS5007117.08665125IPR001356Homeobox domain
SMARTSM003891.6E-1767129IPR001356Homeobox domain
CDDcd000861.46E-1668126No hitNo description
PfamPF000467.9E-1769123IPR001356Homeobox domain
PROSITE patternPS000270100123IPR017970Homeobox, conserved site
PfamPF021837.2E-10125159IPR003106Leucine zipper, homeobox-associated
SMARTSM003407.8E-22125168IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MAVFPPTGSS SLELTISVPG FSSYPSLPNS SVRGLDINQV PSIQADQEEW ITAGVEDEED  60
SSNGSGPPRK KLRLTKEQSR LLEESFRQHH TLNPKQKEAL AMQLKLRPRQ VEVWFQNRRA  120
RSKLKQTEME CEYLKRWFGS LTEQNRRLQR EVEELRAMKV GPPTVLSPHS CEPLPASTLT  180
MCPRCERVTT TXXXDRDRDR GSHTKTNISS APATTLSSKV ATPAL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117125RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008243444.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243444.21e-162PREDICTED: homeobox-leucine zipper protein HOX3
SwissprotQ0JKX13e-82HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH383e-82HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLM5XG601e-153M5XG60_PRUPE; Uncharacterized protein
STRINGEMJ251171e-154(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95063040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.12e-80homeobox-leucine zipper protein 17