PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008243687.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GATA
Protein Properties Length: 180aa    MW: 20034.5 Da    PI: 10.0715
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008243687.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.13.7e-16122158135
            GATA   1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+  nC++t++p+WR gp g+k+LCn CG+++rk ++
  XP_008243687.1 122 CTnyNCRVTESPMWRTGPLGPKSLCNRCGIRFRKIKQ 158
                     55559****************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.2E-11116169IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.85E-11119163No hitNo description
Gene3DG3DSA:3.30.50.102.7E-11119164IPR013088Zinc finger, NHR/GATA-type
PfamPF003205.5E-14122158IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.143126154IPR000679Zinc finger, GATA-type
CDDcd002021.58E-8126155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MDPKGVQNGF EMTNFDQHEA NLGGTDCLVD LTLRLGIPSS DKNNDQQSHT AHGSSTSQAV  60
DRYSLNNLNV NGHRQYEFPA PPELKNYCII NISNRRGKTG GSRKRKTTGR RPAKVGDIDK  120
TCTNYNCRVT ESPMWRTGPL GPKSLCNRCG IRFRKIKQKE ETEQQAAGAA FKQLHAVSKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194111RRGKTGGSRKRKTTGRRP
2101106SRKRKT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008243687.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243687.11e-134PREDICTED: GATA transcription factor 18
TrEMBLA0A314Z6001e-119A0A314Z600_PRUYE; GATA transcription factor 18
STRINGXP_008243687.11e-134(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137781622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.11e-14GATA transcription factor 29