PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008243815.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 26854.1 Da    PI: 6.6253
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008243815.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.71e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+n+qvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s
  XP_008243815.1  9 KRIENKINQQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSTRGKLYEFCS 59
                    79***********************************************96 PP
2K-box75.11.9e-2582161988
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                     + +++++s +q++ +Lk+++e Lq +qR++lGedL+ L  keLqqLe+qL+ sl++iRs+K+++lle  +el++k +e +
  XP_008243815.1  82 QPAQDSQSRYQDYVNLKAKVEVLQLTQRNFLGEDLGHLGTKELQQLENQLDMSLRQIRSTKEQMLLEANNELRRKLEECD 161
                     5678899********************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.2E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.492161IPR002100Transcription factor, MADS-box
CDDcd002651.36E-45278No hitNo description
SuperFamilySSF554551.96E-33282IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-32323IPR002100Transcription factor, MADS-box
PfamPF003192.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-323859IPR002100Transcription factor, MADS-box
PfamPF014862.2E-2184159IPR002487Transcription factor, K-box
PROSITE profilePS5129713.00787195IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGRGKVELKR IENKINQQVT FAKRRNGLLK KAYELSVLCD AEVALIVFST RGKLYEFCSG  60
SSMEKTLERY QRCSYSALEA SQPAQDSQSR YQDYVNLKAK VEVLQLTQRN FLGEDLGHLG  120
TKELQQLENQ LDMSLRQIRS TKEQMLLEAN NELRRKLEEC DAAIERYSWT TEEQNQNVPN  180
SSHHQAAQFE GVLDHSQCNN TLQIGYNPAA VTDHHELQSS TQSHSGLIFP GTWVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-20170169MEF2C
5f28_B7e-20170169MEF2C
5f28_C7e-20170169MEF2C
5f28_D7e-20170169MEF2C
6byy_A8e-20170169MEF2 CHIMERA
6byy_B8e-20170169MEF2 CHIMERA
6byy_C8e-20170169MEF2 CHIMERA
6byy_D8e-20170169MEF2 CHIMERA
6bz1_A9e-20170169MEF2 CHIMERA
6bz1_B9e-20170169MEF2 CHIMERA
6bz1_C9e-20170169MEF2 CHIMERA
6bz1_D9e-20170169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008243815.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243815.11e-176PREDICTED: MADS-box protein CMB1-like isoform X3
SwissprotQ8LLR22e-89MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLM5XAC71e-160M5XAC7_PRUPE; MADS-box protein 16
STRINGXP_008243812.11e-171(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.11e-77MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]