PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008243974.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TCP
Protein Properties Length: 229aa    MW: 24941.8 Da    PI: 6.431
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008243974.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.82e-34571773104
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......... 88 
                      k  ++ ++hTkv+gR+RRvR++a caar+F+L++eLG+ +d++tieWLl+ a+ +i ++tgt++ +a+  ++++  +s++ +s +         
  XP_008243974.1  57 RKSASSRDRHTKVNGRGRRVRMPAMCAARIFQLTRELGHRSDGETIEWLLRHAESSIVAATGTGTLPAEPISTSAPAVSSQVPSLAcrahplssl 151
                     5778999********************************************************88888555333333333333333444455556 PP

             TCP  89 ..........kaaksaakskksqksa 104
                                +++ +a+++++++++
  XP_008243974.1 152 ngggqfmyplVSSAHQAQPNQPHQQP 177
                     66666777652222222444444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.4E-2961166IPR005333Transcription factor, TCP
PROSITE profilePS5136926.15762116IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGSEMALAPL RNHEDPTLIP TAVLSSAALE TASSRQHSQQ SIQSLQPKTH NQLSQTRKSA  60
SSRDRHTKVN GRGRRVRMPA MCAARIFQLT RELGHRSDGE TIEWLLRHAE SSIVAATGTG  120
TLPAEPISTS APAVSSQVPS LACRAHPLSS LNGGGQFMYP LVSSAHQAQP NQPHQQPSIR  180
LDLCQPAGLD YTEYRQHMPF TSLLLHPAEN EEEEEEDGQQ EEALCLGDG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008243974.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243974.11e-168PREDICTED: transcription factor TCP11
SwissprotQ9SJK73e-35TCP11_ARATH; Transcription factor TCP11
TrEMBLA0A314ZUJ11e-153A0A314ZUJ1_PRUYE; Transcription factor TCP11
STRINGXP_008243974.11e-167(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38193363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.13e-34TCP family protein