PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008244000.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 250aa MW: 27440 Da PI: 7.5678

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008244000.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.7	3e-41	60	159	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kf +vhk+FGasnv+k+l ++ e++r da++slvyeA+ r+rdPvyG++gvi++lqqq+++l++el+ XP_008244000.1 60 PCAACKLLRRRCAEECPFSPYFSPHEPQKFSAVHKVFGASNVSKMLIEVAENQRADAANSLVYEANLRLRDPVYGCMGVISNLQQQIQSLHQELN 154 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_008244000.1 155 AVRTE 159 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.595	59	160	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.9E-41	60	157	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MSRDRDIITL VEIGKKIRRE SDPSGDDQMG TMSTARHNNS FGLPQGMMMM NNTTLNTITP 60 CAACKLLRRR CAEECPFSPY FSPHEPQKFS AVHKVFGASN VSKMLIEVAE NQRADAANSL 120 VYEANLRLRD PVYGCMGVIS NLQQQIQSLH QELNAVRTEI LRYQYKEATN HMVSSTNIMH 180 HHPSLVSTSG MVSIAGPPQA IPTPPPPPPP PPSSVVFSSS SSSSTSSLYN PSTNTTGYSS 240 MSSDNIPYFD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-44	53	167	4	118	LOB family transfactor Ramosa2.1
5ly0_B	3e-44	53	167	4	118	LOB family transfactor Ramosa2.1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00283	DAP	Transfer from AT2G30340	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008244000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008244000.1	0.0	PREDICTED: LOB domain-containing protein 15
Swissprot	Q9AT61	2e-71	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A251NK43	1e-147	A0A251NK43_PRUPE; Uncharacterized protein
STRING	XP_008244000.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	1e-67	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]