PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008244028.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 307aa    MW: 33140.9 Da    PI: 7.2849
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008244028.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.4e-09654347
                     SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqky 47
                      W +eEd+ + +a++++  +     +W++ a+ ++  ++ +++k ++q++
   XP_008244028.1  6 VWNKEEDKAFENAIAMHWIDeeseeQWEKLAELVP-SKSMEELKQHYQML 54
                     6**********************************.************86 PP
2Myb_DNA-binding40.75.5e-13134178347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
   XP_008244028.1 134 PWTEEEHRLFLLGLEKFGKGDWRSISRNFVISRTPTQVASHAQKY 178
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.375256IPR017884SANT domain
SMARTSM007178.1E-6357IPR001005SANT/Myb domain
PfamPF002493.8E-6654IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-4655IPR009057Homeodomain-like
CDDcd001671.54E-8755No hitNo description
SuperFamilySSF466891.17E-8761IPR009057Homeodomain-like
PROSITE profilePS5129417.47126183IPR017930Myb domain
SuperFamilySSF466892.55E-17129184IPR009057Homeodomain-like
TIGRFAMsTIGR015578.5E-18130181IPR006447Myb domain, plants
SMARTSM007173.2E-11131181IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-11132177IPR009057Homeodomain-like
CDDcd001671.66E-10134179No hitNo description
PfamPF002492.1E-11134178IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MSSASVWNKE EDKAFENAIA MHWIDEESEE QWEKLAELVP SKSMEELKQH YQMLVDDVSA  60
IEAGHTPLPN YAAAEEATSS SKDTAARASS GASAPDKRLN CGHGGGFSAL AHDTSGHGGK  120
GGSRSDQERK KGIPWTEEEH RLFLLGLEKF GKGDWRSISR NFVISRTPTQ VASHAQKYFI  180
RLNSMNRDRR RSSIHDITSV NNGDVSSHQP PITGQQTNTY APSAAAAGAT TIGVGPQSAK  240
HRAHQPHMAG LGMYGAPMGH PVSAPPGHHM GSAVGTPVML PPGHHPHTHP PYVVPVAYPM  300
AHPTMHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-12371773RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008244028.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008244028.10.0PREDICTED: transcription factor DIVARICATA
SwissprotQ9FNN61e-83SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A314XPJ90.0A0A314XPJ9_PRUYE; Transcription factor SRM1
STRINGXP_008244028.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106943340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.18e-83MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]