PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008244133.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 259aa    MW: 28002.1 Da    PI: 6.7714
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008244133.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.64.9e-39531541101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar+ dPvyG+v++il+lqqq+++l+ael
  XP_008244133.1  53 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPLNRRQDAVVTISYEAQARLADPVYGCVSTILALQQQVASLQAEL 147
                     7***********************9989******************************************************************* PP

          DUF260  95 allkeel 101
                     a+++++l
  XP_008244133.1 148 AMVQTQL 154
                     **99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.92352154IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-3853151IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MADQPVQGDH YTSESRRKGT SGGAGRPTSN TEAAATTTNT STNSTVVVGG AAPCGACKFL  60
RRKCISGCIF APHFGSDQGA ARFAAVHKVF GASNVSKLLL HIPLNRRQDA VVTISYEAQA  120
RLADPVYGCV STILALQQQV ASLQAELAMV QTQLINSRFA FANALQISSQ QRQQQQQQQQ  180
HEQQQNMALM LQPAYSNNSS ASTNLINMCS FTSNFDLAAK TAPSSQSLDP LQLSRPSQDD  240
EDDEEESQVP LMFAHDRYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-39491607115LOB family transfactor Ramosa2.1
5ly0_B3e-39491607115LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008244133.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008244133.10.0PREDICTED: LOB domain-containing protein 20
SwissprotQ9SRV32e-80LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A314ZUH91e-148A0A314ZUH9_PRUYE; LOB domain-containing protein 20
STRINGXP_008244133.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.12e-66LOB domain-containing protein 20