PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008244175.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 458aa    MW: 52843.2 Da    PI: 6.7124
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008244175.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM124.68.4e-39161441127
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp+GfrF+Ptdeelv++yLk+kv+g ++++e +i+e+di+k+eP+dL  k  +k ++++ +fFs+ +  y+ +++++r+t++g+Wk tg+++++ 
  XP_008244175.1  16 LPVGFRFRPTDEELVDYYLKNKVQGMDFHAEGIIDEIDILKFEPRDLVaKsLMKPDDENGFFFSQPE--YTPKNKTKRSTEEGFWKITGREHDIR 108
                     79****************************999**************74435555666779998875..566789******************** PP

             NAM  94 sk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                     ++  +++ +g k++L+fy g+ +++ kt+Wvmhey 
  XP_008244175.1 109 TRdtRRTFIGKKRILTFYIGHGRNSDKTNWVMHEYY 144
                     99655666***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-4213163IPR003441NAC domain
PROSITE profilePS5100542.62416165IPR003441NAC domain
PfamPF023652.7E-2317144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MIRFGRAAAE EGDLSLPVGF RFRPTDEELV DYYLKNKVQG MDFHAEGIID EIDILKFEPR  60
DLVAKSLMKP DDENGFFFSQ PEYTPKNKTK RSTEEGFWKI TGREHDIRTR DTRRTFIGKK  120
RILTFYIGHG RNSDKTNWVM HEYYIPKAHP NANQRDFVLC HLKKNVKNSD EIHTDVATTC  180
DEGEPSTRNA FDVENQPKHG MDIQEEDTQQ PENLDYFEQA KDRWLASSCS NNDHNATFAD  240
NDSASELEER LRPFNTKPFH AGELSLEMLY ELQHGSSQSI QDIDIMLHNQ LSRQAASSVN  300
VAPKPQTDRV QSEAGIALRK YGIRLRSDRI ALRDTSADEY YTREKTRRIT YPPEKAKEPE  360
KPKPEPEKPK APAYHRTAAD LVEKQISITK SSIDKKVPQG SMEQTQNRTT PGNWKRSFIT  420
WQTSPLKSPP SVYIFNTVLG TILFLFCVRE VVLYGEWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-251416418167NAC domain-containing protein 19
3swm_B3e-251416418167NAC domain-containing protein 19
3swm_C3e-251416418167NAC domain-containing protein 19
3swm_D3e-251416418167NAC domain-containing protein 19
3swp_A3e-251416418167NAC domain-containing protein 19
3swp_B3e-251416418167NAC domain-containing protein 19
3swp_C3e-251416418167NAC domain-containing protein 19
3swp_D3e-251416418167NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008244175.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008244175.10.0PREDICTED: NAC domain-containing protein 19-like
TrEMBLA0A251QIP90.0A0A251QIP9_PRUPE; Uncharacterized protein
STRINGXP_008244175.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13478522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.21e-30NAC 014