PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008244179.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 493aa    MW: 57401.1 Da    PI: 6.3147
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008244179.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM123.22.3e-38181401127
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     +p+GfrF+Ptdeelv++yLk+k+eg + ++e++i+e+di+k+ePwdLp k  +k+++++w+fF k +k        +ratk+g+Wk t kd+ ++
  XP_008244179.1  18 VPVGFRFRPTDEELVNYYLKNKLEGMDSHAENIIDEIDILKFEPWDLPdKsLIKSDDENWFFFYKYKK-------GSRATKEGFWKITSKDRVIK 105
                     599***************************999**************964477888899999987644.......579999************** PP

             NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                     ++ +++++  k++L+fy gr +k++kt+Wv+hey 
  XP_008244179.1 106 ARdNRTVIAKKRILTFYIGRVRKSTKTNWVIHEYY 140
                     995566688899**********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.15E-4416161IPR003441NAC domain
PROSITE profilePS5100545.66718163IPR003441NAC domain
PfamPF023651.9E-2219140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MARLSRAAEE EEEGDLSVPV GFRFRPTDEE LVNYYLKNKL EGMDSHAENI IDEIDILKFE  60
PWDLPDKSLI KSDDENWFFF YKYKKGSRAT KEGFWKITSK DRVIKARDNR TVIAKKRILT  120
FYIGRVRKST KTNWVIHEYY IPDDAHPNAN KQRDFVLCHL KKNVKKSDEN TDVATTCDEG  180
ETSTHNASDF ENLPVHGMVS LEFQMQEDIH PRENLDYFER TRDRWLANSH RNNDHNAFQF  240
DFEANDPEAE EFARSLLIDP QFDTDTDTEP IYVQSPERCE PQMFFEPQYV SSQSRRDTDV  300
MFRNLLSRQA SSSVNVAPQP QTSELQLQSG TSERTHRPQP KSISVLRDTS AVNVDALTFS  360
VNRIQLATDD EYYTKERTRR RTHPPVGKLR EIKLQQSKAK EPEERRTSVD LPQKQISITK  420
SSIDGKVAQG KKTEKDVEQT QNRTTPSNWK GSFITWQTFP LTSPPSVYIC NTVLGSILFY  480
FCLREVVLYG KWC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-311616215164NO APICAL MERISTEM PROTEIN
1ut4_B2e-311616215164NO APICAL MERISTEM PROTEIN
1ut7_A2e-311616215164NO APICAL MERISTEM PROTEIN
1ut7_B2e-311616215164NO APICAL MERISTEM PROTEIN
3swm_A2e-311616218167NAC domain-containing protein 19
3swm_B2e-311616218167NAC domain-containing protein 19
3swm_C2e-311616218167NAC domain-containing protein 19
3swm_D2e-311616218167NAC domain-containing protein 19
3swp_A2e-311616218167NAC domain-containing protein 19
3swp_B2e-311616218167NAC domain-containing protein 19
3swp_C2e-311616218167NAC domain-containing protein 19
3swp_D2e-311616218167NAC domain-containing protein 19
4dul_A2e-311616215164NAC domain-containing protein 19
4dul_B2e-311616215164NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008244179.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008244179.10.0PREDICTED: NAC domain-containing protein 45-like isoform X1
TrEMBLA0A314YGK50.0A0A314YGK5_PRUYE; NAC domain-containing protein 45-like isoform X2
STRINGXP_008244179.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13478522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.12e-39NAC domain containing protein 62