PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008244238.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 832aa    MW: 88815.5 Da    PI: 4.4739
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008244238.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM92.66.7e-291742923128
             NAM   3 pGfrF.hPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     pG++F  Pt++elv  yL++++egk+ e+ + i+ + ++++ eP+dLp          +fFs+ d ky+++kr nr+t++g+ k+tgk +e++++
  XP_008244238.1 174 PGVKFfFPTEQELV-GYLTNQIEGKDSEFRDLIPVIdNVCEREPRDLP---------AFFFSQPDYKYKNSKRCNRSTDEGFYKSTGKVREIKAE 258
                     7888537*******.9*************999****88*********9.........59**********************************98 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++++g k++L +y+grap+++kt+ vmhey+l
  XP_008244238.1 259 qSQAVIGNKRILSYYEGRAPQAKKTKHVMHEYSL 292
                     456679**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.78172318IPR003441NAC domain
SuperFamilySSF1019414.97E-28173318IPR003441NAC domain
PfamPF023651.0E-13174292IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 832 aa     Download sequence    Send to blast
MAADKPAPAL PPLTVKLDPT KYPLWLAQII PFLNSSGLMS FVDGTAMCPP AFLLDADGKP  60
TNTTNPDYDH WIQMDQFVLS LINGSLSHFV VATLEGSLSA RATWVALEAL LLGAEQQVPT  120
PMVSVSDHST AAAAASPGCG FDHVASGGKR SGGGGGGGGG GTTGEGVSGK KGLPGVKFFF  180
PTEQELVGYL TNQIEGKDSE FRDLIPVIDN VCEREPRDLP AFFFSQPDYK YKNSKRCNRS  240
TDEGFYKSTG KVREIKAEQS QAVIGNKRIL SYYEGRAPQA KKTKHVMHEY SLTQTKLAQL  300
GAQNNQQREL VLCHLTNKSA KSAKLKDDSI CGDELAEPAI VGEIAYSKDV QAAATDMIQG  360
PDEHLKDKDA LLGTENRNEC AEPSCADLGE NMDSTFLSPE QLAATSATTP TSATSFGGFG  420
VGSPDGFFLS DIDDLLKQPS CADLGENMDS TFLSPEQLAA TSATTPTSAT SFGGFGVGSP  480
DGFLLPDIDD MLKQPSCADL GENMDLTFLP PEQQAATSAT TPTSATSFGG FGVGSPDGFL  540
LSDIDDLLKQ PSCADLGENM DSTFLPPEQL AATSATTPTS ATSFGGFGAG SPDGFLLPDI  600
DDLLKEPFCA DQPHQPPPAP HPHQPPPAPH PHQPPPAPQS HQPPSPSQPQ NYCFSTLPSA  660
LCTKQGNVPS LYNDDCSRQL SPTGNPPHPH QPPPAPHPHQ PPPPSQPQNY CSSTLPSALC  720
TKQGNVPSLY NDDCSKQLSP TGNNVSTNYH HEPVSNTAYS IQNGATDERF SEVYKISTND  780
HNESVSSEAY FQPEENLGIL HPFRPQDYTL LSPRNTELGD FMHANNYIDM QW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-1317432422174NAC domain-containing protein 19
3swm_B2e-1317432422174NAC domain-containing protein 19
3swm_C2e-1317432422174NAC domain-containing protein 19
3swm_D2e-1317432422174NAC domain-containing protein 19
3swp_A2e-1317432422174NAC domain-containing protein 19
3swp_B2e-1317432422174NAC domain-containing protein 19
3swp_C2e-1317432422174NAC domain-containing protein 19
3swp_D2e-1317432422174NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146154GGKRSGGGG
2150161SGGGGGGGGGGT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008244238.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008244238.10.0PREDICTED: uncharacterized protein LOC103342394
TrEMBLA0A251QIK20.0A0A251QIK2_PRUPE; Uncharacterized protein
STRINGXP_008244238.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3993422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.12e-25NAC transcription factor-like 9