PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008244246.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HSF
Protein Properties Length: 243aa    MW: 27766.2 Da    PI: 5.5768
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008244246.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.43.2e-35221132102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y ++ed++++++isw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv++++         weF +++F+kg+k++l++
  XP_008244246.1  22 FLLKTYMLVEDPATDDVISWNDDGSAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVSTSR---------WEFCNDKFRKGEKDQLCE 107
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_008244246.1 108 IRRRKA 113
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-3615106IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.85E-3317111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.9E-5218111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-192245IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-3122111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-196072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-197385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEGVCDQKGL LEYVRKSSPP PFLLKTYMLV EDPATDDVIS WNDDGSAFVV WQPAEFARDL  60
LPTLFKHSNF SSFVRQLNTY GFRKVSTSRW EFCNDKFRKG EKDQLCEIRR RKAWASKQQP  120
INNIALNQAA QAMPNQDEFD EDQRSNSSTS SSSDYSSLVD ENKRLKQENG VLSSELTSMK  180
RKCKELLDLV AKCGDSAEKE EENSERVPKL FGVRLEVEGE TERKRKRAEI SESASILLSQ  240
ACK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B2e-22221114104Putative transcription factor
5d5x_B2e-22221114104Putative transcription factor
5d5x_E2e-22221114104Putative transcription factor
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008244246.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008244246.11e-180PREDICTED: heat stress transcription factor B-3
SwissprotO222308e-70HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A251NAD01e-162A0A251NAD0_PRUPE; Uncharacterized protein
STRINGXP_008244246.11e-179(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.12e-63heat shock transcription factor B3