PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008244323.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 86aa    MW: 10199.7 Da    PI: 9.2573
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008244323.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.25.8e-161057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll ++ + +G g W+ ++ + g++R++k+c++rw++yl
   XP_008244323.1 10 KGAWTKEEDGLLSKCMENHGEGKWHEVPYKAGLNRCRKSCRLRWLNYL 57
                     79*********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.622561IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-22660IPR009057Homeodomain-like
SMARTSM007171.7E-11959IPR001005SANT/Myb domain
PfamPF002491.1E-141057IPR001005SANT/Myb domain
SuperFamilySSF466891.54E-211185IPR009057Homeodomain-like
CDDcd001679.47E-81257No hitNo description
Gene3DG3DSA:1.10.10.601.3E-86185IPR009057Homeodomain-like
PROSITE profilePS512948.0486286IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MEGNNLDVRK GAWTKEEDGL LSKCMENHGE GKWHEVPYKA GLNRCRKSCR LRWLNYLKPN  60
IKRGEFTEDE VDLLIRLHKL LGNRYQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-1258522101MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008244323.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7722831e-127KP772283.1 Prunus cerasifera MYB10.3 transcription factor (MYB10.3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008244323.11e-57PREDICTED: transcription factor MYB114-like
SwissprotQ9FNV93e-36MY113_ARATH; Transcription factor MYB113
TrEMBLA0A0K1TPF17e-52A0A0K1TPF1_9ROSA; MYB10.3 transcription factor
TrEMBLM5WV617e-52M5WV61_PRUPE; Uncharacterized protein
STRINGXP_008244323.14e-57(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-38myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]