PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008244393.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

MYB_related

Protein Properties

Length: 224aa MW: 25623 Da PI: 8.7295

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008244393.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.1	5.5e-15	26	69	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T++E +ll++++k+lG++ W++Ia +++ gRt + +k++w++ XP_008244393.1 26 RGEFTEDEVDLLIRLHKLLGNR-WSLIAGRLP-GRTSNGVKNYWNT 69 899*****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	4.101	1	20	IPR017877	Myb-like domain
SuperFamily	SSF46689	9.41E-20	6	74	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.2E-10	7	32	IPR009057	Homeodomain-like
PROSITE profile	PS51294	23.918	21	75	IPR017930	Myb domain
SMART	SM00717	2.8E-14	25	73	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-13	26	69	IPR001005	SANT/Myb domain
CDD	cd00167	4.36E-10	28	71	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.5E-19	33	72	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MDAGLYRCRK SCRLRWLNYL KPNIKRGEFT EDEVDLLIRL HKLLGNRWSL IAGRLPGRTS 60 NGVKNYWNTR LRTNSLVKRT TKEKFQETIK PIVIRPQPRS FTKSSNCLSF KEPILDHTQL 120 EKNFSTPSQT STSTSTRIGS DWWETFLDDK DDATERATGS GLGLDEELLA NFWVDDDMPQ 180 SARTCINFSE EELSIEPAKS TQIPPAAALS YQFSANWSIC ALPK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-17	7	72	40	105	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008244393.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP772283	0.0	KP772283.1 Prunus cerasifera MYB10.3 transcription factor (MYB10.3) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008244393.1	1e-166	PREDICTED: transcription factor MYB113-like
Swissprot	Q9FNV9	5e-42	MY113_ARATH; Transcription factor MYB113
TrEMBL	A0A0K1TPF1	1e-118	A0A0K1TPF1_9ROSA; MYB10.3 transcription factor
TrEMBL	M5WV61	1e-118	M5WV61_PRUPE; Uncharacterized protein
STRING	XP_008244393.1	1e-165	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31	34	817

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	1e-42	myb domain protein 113

Publications ? help Back to Top
Li T, et al. Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis. Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83 [PMID:25450360] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]