PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008244440.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 394aa    MW: 45373.3 Da    PI: 6.9556
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008244440.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.37.1e-2074164190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                     ++Y +YAk +GFsvrk+k  ++  +g++ +r+++Cskeg r+e+ ++ +e+ r ++a tr +C a++ v  ek +++++v ++e +HnH+l+
  XP_008244440.1  74 EYYMSYAKGIGFSVRKDKLVRN-SEGKVCRRRWCCSKEGLRNEKFNDrSERIRPPKAITRQNCSAHFWVGYEKkRDVYVVRNFEPHHNHQLV 164
                     69*****************999.6777***************9988845667779***************99989***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.6E-1874164IPR004330FAR1 DNA binding domain
PfamPF105512.2E-32286380IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MDRGVETSKG GCSDSGYLSG CERSSHKAPA TESGHMSVEH MVSQSSDDNG VDMIAPRKED  60
VMGKEFKTIE LAEEYYMSYA KGIGFSVRKD KLVRNSEGKV CRRRWCCSKE GLRNEKFNDR  120
SERIRPPKAI TRQNCSAHFW VGYEKKRDVY VVRNFEPHHN HQLVTPLESP YLRCNRVVRK  180
SDLAQAVGMQ RALFRTCQTY EYMVDQCGGY LNVGFQIKDL YNKLDASRRE ILLDGDTEAA  240
LCYLKAKGAM DPEFFCKFSV DEENRLGNLF WRDSTSLLDY IAYGDVLIFD STYKTNDYDN  300
PLVLFVGSNN YRSTVMFGCA LLQDETFETY KWLLETFMAS MKDKKPISIL TDGDEAMRKA  360
IDDVFPMSNH RLCSWHVSRN AQNNLKDDEL LRNF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008244440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008244440.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLM5WZG30.0M5WZG3_PRUPE; Uncharacterized protein (Fragment)
STRINGXP_008244440.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-58FAR1-related sequence 5