PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008244684.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 580aa    MW: 63159.3 Da    PI: 6.9065
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008244684.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH283.9e-09394441455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_008244684.1 394 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 441
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.46E-17388459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.70E-10388445No hitNo description
Gene3DG3DSA:4.10.280.101.2E-16390458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663390440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-6394441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10396446IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MENEFFLNAG IPPLHFGQTS SMPAWRSSFS TAMDVQATAT ADRNCSSEQS PDCFYNPNWD  60
KSADQNIHFE SALSSMVSSP AASNSNISNE SFVIRELIGK LGNIGSSGEI SPHSQSLLGI  120
QANTYMGRNG NGNASTNTSC YSTPLNSPPK LSLPIMDHHL KKEKLPNMGK PMPLNSSVAE  180
FSADPGFAER AAKFSCFGSR SFNGRTTQLG MNNNNSSNNN TELPYRSNAI MGNGKLPRVS  240
SSPALKALGS QTGLQEKMNS LLQDRHELPI SREESTLSEQ NPNGETGLVA SNSMDLNSRK  300
RKSVSKGKAK EPPPISSPSP IATKGAELND NSNAKRSKPN ENNGNDQNGS VKAEEDTKGS  360
ISSDEKQTKT GPKPPEPPKD YIHVRARRGQ ATDSHSLAER VRREKISERM KLLQDLVPGC  420
NKVTGKALML DEIINYVQSL QRQVEFLSMK LASVNTRLDF NMDALMSKEI FQQNNSLPQH  480
PIFPLDSSAQ AVYGHQRQQN PALQNNISNG AVDPLDTSLC QSLGMQLPPL SGFNSEGIPQ  540
FPAFGEDDLQ TIVQMGYGQN PNRETELDGS NQVSHMKIEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297302SRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008244684.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008244684.10.0PREDICTED: transcription factor bHLH62
TrEMBLM5VNC00.0M5VNC0_PRUPE; Uncharacterized protein
STRINGXP_008244684.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-114bHLH family protein