PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008244842.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 246aa    MW: 28169.8 Da    PI: 6.5288
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008244842.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH474.5e-1574125155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++ +hn+ Er RR++iNs ++ Lr+llP +   + kKls   +  ++v+YI +Lq
  XP_008244842.1  74 KKLNHNASERDRRQKINSLYSSLRSLLPAD---QMKKLSIPNTISRVVKYIPELQ 125
                     6789**************************...9******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.15E-1469138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.08173124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-1274125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-474129No hitNo description
Gene3DG3DSA:4.10.280.107.6E-1274142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-979130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MLALSPPSFS TIGWPLEDPK SHDQNYFYRD SFTDQIAESF LHILPSQLPQ VEPARSTPST  60
TLSGEYAGDS TMVKKLNHNA SERDRRQKIN SLYSSLRSLL PADQMKKLSI PNTISRVVKY  120
IPELQKQVEG LIRKREELLV RISKQEDQEL HEEKKMKSTA GSSLSAVSTY RLNDREVAIQ  180
ISTFKTHNNL LSEILLNLEE EGLQILNASS FESSGERVFY NLHLQVERSY RLESENLSEK  240
LMSFYA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132156RKREELLVRISKQEDQELHEEKKMK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008244842.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008244842.11e-180PREDICTED: transcription factor ORG2-like
TrEMBLA0A251N6E51e-170A0A251N6E5_PRUPE; Uncharacterized protein
STRINGXP_008244842.11e-179(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.15e-59bHLH family protein