PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008245100.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

G2-like

Protein Properties

Length: 254aa MW: 28006.4 Da PI: 7.3942

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008245100.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.8	8.9e-32	113	166	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hv+SHLQ+YR+ XP_008245100.1 113 PRMRWTTSLHNRFVHAVELLGGHERATPKSVLELMDVKDLTLAHVRSHLQMYRT 166 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.84E-16	110	166	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.1E-28	111	166	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.0E-24	113	166	IPR006447	Myb domain, plants
Pfam	PF00249	3.4E-8	114	165	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MRATSESAEW IFLATILGLE MLSAACDQAS SPRRPHYALS GMLLAIAAVL ISIWELIYKG 60 KNQRNANTTD NNILRKPSDS NSSTHTSTIT RTSSSSPLFQ AQGGLLRSRL RAPRMRWTTS 120 LHNRFVHAVE LLGGHERATP KSVLELMDVK DLTLAHVRSH LQMYRTVKTA DRAAAFSGQS 180 DVHENASSVD ATEDIIFYLQ NPRRSGDQLL SAQTIHVQDN KDSWENSSST GETSLHAIGA 240 NIQSLDDQEV VVPI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-17	114	168	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-17	114	168	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-17	114	168	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-17	114	168	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-17	114	168	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-17	114	168	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-17	114	168	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-17	114	168	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008245100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008245100.1	0.0	PREDICTED: probable transcription factor KAN2 isoform X3
Swissprot	Q9C616	1e-45	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A251P4F8	2e-66	A0A251P4F8_PRUPE; Uncharacterized protein
TrEMBL	M5WUE2	1e-66	M5WUE2_PRUPE; Uncharacterized protein
STRING	XP_008245097.1	1e-123	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	2e-47	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]