PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008245175.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 314aa    MW: 35911.5 Da    PI: 5.9216
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008245175.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.44.8e-0840824990
            FAR1 49 ekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                    +  ++++++tr +C a++ v  ek +++++vt++e +HnH+l+
  XP_008245175.1 40 HLDSKPKPSTRENCPAHFWVGYEKkRDTYVVTNFEPHHNHQLV 82
                    4567899**************99989***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-54182IPR004330FAR1 DNA binding domain
PfamPF105513.7E-28204298IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDRGVETSKG GCSDSGYLGG CERLSHRALA IESGHMSVEH LDSKPKPSTR ENCPAHFWVG  60
YEKKRDTYVV TNFEPHHNHQ LVTPLESPYL RCNRVVRNSD LAQAVEMRRA LVRTCHTYEY  120
MVDQYGGYLN VGFQIKDLYN KLDASRGEIL LDADTEAAFS YLKGKGAMDP EFFCKFSVDE  180
ENWLGNLFSR DPTSLLEYIA CGDVLIFDST YKANMYDKPL VLFVSSNNNR STVMFGCALL  240
HDETFETYKW LLETFMASVK DKKPISILTD GYEAMHKSID DVFPMSNHQL CSWHVSRNAQ  300
NNLKDDELLR NFQV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008245175.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008245175.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLM5WQ971e-180M5WQ97_PRUPE; Uncharacterized protein
STRINGXP_008245175.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3265734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-39FAR1-related sequence 5