PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008245390.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 483aa    MW: 54002.4 Da    PI: 6.8742
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008245390.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-11307353455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr+++P+       K++ ++ L  Av YI++L+
  XP_008245390.1 307 NHVEAERQRREKLNHRFYVLRSVVPNV-----SKMDRSSLLADAVSYINQLK 353
                     799***********************6.....5*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.5E-3822213IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000834.90E-14301357No hitNo description
SuperFamilySSF474596.15E-17302366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.317303352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-9307352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-17307366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-15309358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MEEIISSSSP TNFCQENSSI FQKRLQFIFQ NRPEWWLYSI FWQASNDSND QVSLSWAGGD  60
FRINRDLATK KSNKVVNNYN PKFGFNSVER RKVVNKDVED LFHEDMVDLA MVDHGDVTDS  120
EWFYFYSVSL TQTFAAGHAT NNVLGRAFCS GGFVWLAGAH ELQFYECERV KEARMHGIQT  180
LVCIATPCGV LELASLDVIK EDWGLVHLSK SLFGSDNNNK VSQEGSCEGN ALVHLLENGV  240
FSGAQREMTR QGGTKEAAHI NICDSSPDSP SDSVGNFTSE NTANTRSKKK RRSSSTNGAS  300
RASQLLNHVE AERQRREKLN HRFYVLRSVV PNVSKMDRSS LLADAVSYIN QLKAKVEELE  360
AKVQEQPKNP KVSNASSLDH QSSQSTSSIA NHPHSSYSNR SVAPLEVDVK ILGSDAMIRV  420
QCPDQDYPYA RLMNALKGLG LQVYHASISS VKELMIQDVV ARVPYGFTSE EAMRVSIIKS  480
WCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-23152133192Transcription factor MYC3
4rqw_B3e-23152133192Transcription factor MYC3
4rs9_A3e-23152133192Transcription factor MYC3
4yz6_A3e-23152133192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1287291KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008245390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008245390.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A314UW780.0A0A314UW78_PRUYE; Transcription factor MYC2-like
STRINGXP_008245390.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.16e-59bHLH family protein