PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008245472.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

NF-YC

Protein Properties

Length: 230aa MW: 24676.2 Da PI: 4.4569

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008245472.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	37.7	4.5e-12	3	54	24	75
NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlk 75 arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ XP_008245472.1 3 ARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMN 54 8*************************************99988887777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	1.8E-15	3	58	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.4E-20	3	58	IPR009072	Histone-fold
SuperFamily	SSF47113	2.19E-11	3	58	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
WQARIKKIMQ ADEDVGKIAL AVPVLVSKAL ELFLQDLCDR TYEITLQRGA KTMNAVHLGR 60 GRGRGRGRGR GRASERETLH HETESEPCTS LQHTTKPNPN PGMVVDDASE SKEEMKENAV 120 IPDEADPAVR NFDLNADVIE NEDTKAAVTA AQAATAAQAS STAAQAAATA SQAAATAAPT 180 SSAGPTSEIK HEEYPGWSLS DVDKMAIDPL QLAHLSGRID EDEEDYDEEG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	4e-16	3	58	15	70	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	61	71	RGRGRGRGRGR
2	63	72	RGRGRGRGRA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008245472.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008245472.1	1e-169	PREDICTED: dr1-associated corepressor homolog, partial
TrEMBL	M5XLH5	1e-72	M5XLH5_PRUPE; Uncharacterized protein
STRING	XP_008245472.1	1e-169	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1728	34	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	2e-29	nuclear factor Y, subunit C11