PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008245598.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 243aa MW: 28267.8 Da PI: 10.0097

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008245598.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.3	1.5e-17	11	58	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEdell ++++q+G g W+ ++ + g++R++k+c++rw++yl XP_008245598.1 11 KGTWTREEDELLRQYIQQYGEGKWHQVSLKAGLNRCRKSCRLRWLNYL 58 799*******************************************97 PP
2	Myb_DNA-binding	41.4	3.3e-13	64	107	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T++E +l v++ k+lG++ W++Ia +++ gRt +++k++w + XP_008245598.1 64 RGDFTEDEVDLMVRLRKLLGNR-WSLIAGRLP-GRTSNDVKNYWST 107 899*****************.*****.*********65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.456	1	62	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-22	8	61	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.53E-28	8	105	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-15	10	60	IPR001005	SANT/Myb domain
Pfam	PF00249	5.6E-16	11	58	IPR001005	SANT/Myb domain
CDD	cd00167	2.79E-11	13	58	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.6E-20	62	112	IPR009057	Homeodomain-like
SMART	SM00717	4.2E-12	63	111	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	17.041	63	113	IPR017930	Myb domain
Pfam	PF00249	3.1E-11	64	107	IPR001005	SANT/Myb domain
CDD	cd00167	1.05E-7	67	105	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MEGNNLLRVR KGTWTREEDE LLRQYIQQYG EGKWHQVSLK AGLNRCRKSC RLRWLNYLSP 60 NIKRGDFTED EVDLMVRLRK LLGNRWSLIA GRLPGRTSND VKNYWSTRLR KNKSSRAEND 120 KTLETTKTVI LRPQPRTFSK KSYRLSSPAP TLQYIQLKEN FNWPLPSSPP IENGIDEWKS 180 QLADTNSVER AMCSGFQLEE DFFANFWVEN IAQNTGTGVN SADEGLLSNS DFSSHLWNFS 240 KEK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-23	11	111	27	126	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008245598.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP772285	0.0	KP772285.1 Prunus cerasifera MYB10.5 transcription factor (MYB10.5) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008245598.1	1e-180	PREDICTED: transcription factor MYB113-like
Swissprot	Q9FNV9	3e-58	MY113_ARATH; Transcription factor MYB113
TrEMBL	A0A2H4V120	1e-179	A0A2H4V120_PRUMU; Production of anthocyanin pigment 2-like protein
STRING	XP_008245598.1	1e-180	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31	34	817

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	1e-60	myb domain protein 113

Publications ? help Back to Top
Li T, et al. Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis. Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83 [PMID:25450360] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]