PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008245782.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 184aa    MW: 20988.7 Da    PI: 9.5215
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008245782.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.3e-0828502346
                     -HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                      W++Ia +++ gRt +++k++w +
   XP_008245782.1 28 KWSLIAGRLP-GRTSNHVKNYWST 50
                     6*********.***********65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.1E-62757IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-92753IPR009057Homeodomain-like
CDDcd001670.005052848No hitNo description
PfamPF002492.1E-52850IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MNKQNSAMPH DFGSKYFVPL LLRTLIPKWS LIAGRLPGRT SNHVKNYWST RLRKNKSSGA  60
EKDKTLETTK TVILRPQPRS FSKKPNCLSS PAPTLQHIQL QENFSWPLPS SPPIENGIDE  120
WKSQLADTNS VERAMCSGFQ LEEDFFTNFW IENIAQNTGT GVNYADEGLL SNSDFSFHLW  180
HFSK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008245782.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9999870.0KF999987.1 Prunus persica putative MYB106 mRNA, complete cds.
GenBankKP7722860.0KP772286.1 Prunus cerasifera MYB10.6 transcription factor (MYB10.6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008245782.11e-136PREDICTED: transcription factor MYB113-like
TrEMBLA0A2H4V1211e-108A0A2H4V121_PRUMU; Production of anthocyanin pigment 3-like protein
STRINGXP_008245782.11e-135(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.14e-14myb domain protein 113