PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008245991.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TALE
Protein Properties Length: 333aa    MW: 37683.2 Da    PI: 4.8479
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008245991.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.55.4e-092642962355
                     SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     +yp++ee+ +L++ +gL+++q+ +WF N+R ++
  XP_008245991.1 264 PYPTEEEKLHLSEVTGLDQKQINNWFINQRKRH 296
                     8*****************************885 PP
2ELK36.21.3e-12216237122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK++Ll+KYsgyL +L++EF+
  XP_008245991.1 216 ELKDMLLHKYSGYLTNLRKEFL 237
                     9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.2E-1772116IPR005540KNOX1
PfamPF037902.2E-1774114IPR005540KNOX1
SMARTSM012566.7E-23119170IPR005541KNOX2
PfamPF037911.0E-22122169IPR005541KNOX2
SMARTSM011883.1E-6216237IPR005539ELK domain
PROSITE profilePS5121310.807216236IPR005539ELK domain
PfamPF037893.4E-9216237IPR005539ELK domain
PROSITE profilePS5007112.309236299IPR001356Homeobox domain
SMARTSM003892.9E-12238303IPR001356Homeobox domain
SuperFamilySSF466893.42E-19238307IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.8E-26241301IPR009057Homeodomain-like
PfamPF059205.2E-16256295IPR008422Homeobox KN domain
CDDcd000869.09E-12262300No hitNo description
PROSITE patternPS000270274297IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MNMEDFYRLN PGVISGSEID VNVVHQVENM ATSTRNTSCG FHGHPHPQGH VVDDNMLLFQ  60
TEGMESDHHM SDLIKTQIAN HPRFPDLVDA YLECQKVGAP PEMKSLLEEI GRVSHPMSTC  120
SEIGADPELD EFMESYCEVL RGYKEELSKP FDEATNFLTN IQSQLRNLCK GTFPKTSWDC  180
NSDEGVGSSE EEFSCGEVEA AESQETAAAR AGGDRELKDM LLHKYSGYLT NLRKEFLKKR  240
KKGKLPKDAR TALLDWWTTH YRWPYPTEEE KLHLSEVTGL DQKQINNWFI NQRKRHWKPS  300
EDMRFALMEG VGGSVGAPML FDAGVGTGNI DDM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231240LRKEFLKKRK
2237241KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008245991.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2817730.0GQ281773.1 Prunus persica class I KNOX homeobox transcription factor KNOPE6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008245991.10.0PREDICTED: homeobox protein knotted-1-like 1
SwissprotQ9FP291e-101KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A251NYA40.0A0A251NYA4_PRUPE; Uncharacterized protein
STRINGXP_008245991.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.13e-78KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]