PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008246241.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 157aa    MW: 17922.3 Da    PI: 5.6599
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008246241.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.42e-1113753599
                    EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
              B3 35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99
                    ++ le ++g +W vkl  r + g+++l+kGW eF+k   Lk g  + F++ g+ s f  +v++f +
  XP_008246241.1 13 KIFLEVPDGAVWPVKL-TRPCNGEIWLQKGWPEFAKFYSLKHGCLLFFRYGGEhSHF--RVRIFMR 75
                    6999************.5888888**************************9976777..9998865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.617176IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.9E-13575IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-12782IPR015300DNA-binding pseudobarrel domain
CDDcd100172.61E-141373No hitNo description
PfamPF023622.3E-91375IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MLVMEYGDLM ADKIFLEVPD GAVWPVKLTR PCNGEIWLQK GWPEFAKFYS LKHGCLLFFR  60
YGGEHSHFRV RIFMRNTLEM KYFSSSTDDE AEGNSNPSSE TEGQGNKHDR DLALRTFAKT  120
ELEDLAYSKA LSFKSNNPFL CDENASIILI NSPGKQP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008246241.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008246241.11e-116PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A251NDG61e-102A0A251NDG6_PRUPE; Uncharacterized protein
STRINGXP_008246241.11e-115(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-14B3 family protein