PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008246287.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 150aa    MW: 16894 Da    PI: 7.4035
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008246287.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.22e-115879627
                    -SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  6 CrffartGtCkyGdrCkFaHgp 27
                    C++f +tG+C+yGd+C++ H++
  XP_008246287.1 58 CNRFVKTGFCPYGDSCRYLHPK 79
                    ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004512.1E-4338IPR003604Zinc finger, U1-type
SuperFamilySSF576676.65E-17461No hitNo description
PfamPF062204.7E-11539IPR013085Zinc finger, U1-C type
PROSITE profilePS5010314.9715280IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-65379IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-85582IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-85779IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-95779IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MPLGKYYCEY CDKEFQDTPS ARRRHLQGLQ HLRAKAQWYD SFKDPSHAYT ESLTKGVCNR  60
FVKTGFCPYG DSCRYLHPKN NQQNMVTQGA PGLIDNNQSS TFQENQLVGG SSLPDVVVRD  120
SMGMSWGNLP PSLMPPPEGG YPLLPFVDWG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008246287.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008246287.11e-111PREDICTED: zinc finger CCCH domain-containing protein 3
SwissprotQ0JP113e-41C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLM5WL081e-107M5WL08_PRUPE; Uncharacterized protein
STRINGXP_008246287.11e-110(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119592833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.15e-42C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]